I always laughed when I saw that "Healthy Yogurt" advertising its bacteria as if it was any different than every other kind of yogurt. It's like advertising cheese for having milk in it.
I always wondered why good bacteria was actually helpful to your body. It didn't sound like a great thing to have in you, and no one really fully explained what it does. But I think I learned just as much from tutoring my student as he did from me. We went over general immunity and learned some really interesting things that bacteria does for you.
First of all, it competes for resources in your body. There are many kinds of bacteria in your body and most of the good bacteria have no real adverse effects on you. They do tend to crowd out other bacteria that may be harmful. If bad bacteria comes in and tries to occupy the same space and eat the same food, there just isn't enough to go around and the bad bacteria can't spread easily.
Good bacteria also break down food in your digestive tract. Some nutrients that are very beneficial to your body are too hard to break down on your own. These tiny bacteria metabolize the nutrients and break them down into pieces your body can handle. There are also some waste products from some bacteria that actually mess up the normal functions of certain pathogens, crippling their invasions into your body.
This is probably why doctors are so hesitant to use antibiotics. It kills the good with the bad, and can actually even make things worse. If you have a viral infection, the good bacteria would actually help a bit to keep the virus at bay. Nuking it with antibiotics won't touch the virus and may give it an edge against your body's immunity. Sometimes that's necessary to keep a person alive, and we can always replenish and regrow the good bacteria. Doctors usually prefer letting you sleep in bed for a couple weeks instead of throwing off your natural balance in your body. I think most of us would rather just take a pill and wake up the next day feeling better.
Every man dies, but few truly live. Live your life to its fullest, every day as if it were your last.